species:   Drmel
pid:       MI0005866
parent:    dme-mir-1005
paralog:   
locus:     NT_033779.5:4343696-4343756
matures:   ['UCUGGAAUCUUUAAUUCGCAG', 'GUGAGUUGAUCGAUUUCGAGGUU']
srr:       SRR11906543
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram NT_033779.5:4343696-4343756

0 out of bounds
9 alignments
9 proper strand
9 stranded perfect matches

***********************               ********************** 
GUGAGUUGAUCGAUUUCGAGGUUUUGGCACACGAAUAUAAUCUGGAAUCUUUAAUUCGCAG
(((((((((..((((((.((((((((.....)))....))))))))))).)))))))))..
----------------------------------------UCUGGAAUCUUUAAUUCGCAG l=21 a=1 c
GUGAGUUGAUCGAUUUCGAGGUU-------------------------------------- l=23 a=6 c*
GUGAGUUGAUCGAUUUCGAGGUU-------------------------------------- l=23 a=6 ma
----------------------------------------UCUGGAAUCUUUAAUUCGCA- l=20 a=0 ma*

GUGAGUUGAUCGAUUUCGAGGUU-------------------------------------- l=23 a=6 (c*,ma)
----------------------------------------UCUGGAAUCUUUAAUUCGC-- l=19 a=2 
----------------------------------------UCUGGAAUCUUUAAUUCGCAG l=21 a=1 (c)

mb-01111
ax-1011111
ku-01
ss-101111111110
fn-111
